You didn't mention if the question is about playing diatonic or chromatic thirds, but I assume you mean diatonic. Also you didn't mention if your just asking about a kind of sort of 5 finger short passage of continuous movement through all the octaves. I'll cover the continuous movement as that will give you the technical fingering to cover just about all fingerings for thirds.
As many have already said, there are no absolute correct fingerings. Standard fingerings work for most applications, but should be adapted to either fit the hand or fit the fingering requirements in the surrounding musical context.
Having said that I think there is a general principle to keep in mind: be aware of the transitional fingering for continuous motion in thirds while avoiding the thumb on black keys. That's my own wording - I don't know of a standard wording to use. It best illustrated with examples:
Diatonic thirds:

The basic pattern is...
345
123
...basically third played with every other finger in a kind of fixed 5-finger position.
...but notice that the thumb is repeated...
23
11
...to shift the hand position to allow the basic pattern to fit the keys such that you can continue up and repeat at each octave. (Really its to avoid having the thumb on the black key G#
at the top of the scale.)
To me that is the essence of playing diatonic thirds: a 5-finger position shifted by the repeated thumb transition, and the even more general principle of avoiding the thumb on black keys for scale playing. This applies to all keys.
Chromatic thirds:

...the basic pattern is...
34
12
...where the basic idea is to not use the thumb on the black keys.
When the lower tones of the third pass through B C C#
or E F F#
- or the enharmonic equivalents - the pattern is extended to...
345
123
...so that finger 3 plays the black keys instead of the thumb.
The essence is an alternating two-finger pair extended to fingers 3 and 5 when avoiding the thumb on the black keys. This applies regardless of the starting position in the chromatic scale.
If you need to use alternate fingers for thirds - for any reason - you can keep these transitional fingerings in mind along with the understanding their purpose is to avoid the thumb on black keys.
About your fourth finger:
That's just basic hand anatomy. The fourth finger is less independent that the others.
Unless there is something unusual about your hand the fourth finger problem is a matter of training to gain finger independence.
All of the teaching materials I have seen put 5 finger independence exercises before playing double notes. Make sure you have devoted enough time to finger independence exercises. Don't let your ego get in the way and consider this to be beginner stuff. If your fingers don't move independently, you have to train them.
From my experience it especially important to play such exercises slowly, because slow execution seems to demonstrate smooth control with a relaxed hand. Playing too fast might disguise a kind of 'twichy' motion that disguises a lack of total control.
Don't use 'alternate' fingerings just to avoid poorly trained fingers.