As we unconsciously tune intervals to simplest just ratios, does that mean 7/4 will more frequently appear than 9/5, or 13/7 will do so more than 15/8?
Well, no. Simple in this case means having smaller prime factors. Under that definition, 9/4 is simpler than 7/5, because the largest prime factor in the first ratio is 3 while that of the second is 7. Similarly, 15/8 is simpler than 13/7, because the largest prime factor of the first ratio is 5, while that of the second is 13. This preference exists because intervals don't appear in isolation. For example, consider the ratios with some other pitches in the major scale if the seventh degree is tuned to 13/7:
do - ti, major seventh: 13/7
re - ti, major sixth: 13/7 / (9/8) = 104/63
mi - ti, perfect fifth: 13/7 / (5/4) = 52/35
sol - ti, major third: 13/7 / (3/2) = 26/21
Now look at 15/8:
do - ti, major seventh: 15/8
re - ti, major sixth: 15/8 / (9/8) = 5/3
mi - ti, perfect fifth: 15/8 / (5/4) = 3/2
sol - ti, major third: 15/8 / (3/2) = 5/4
For example, in the "Benedetti's puzzle" in the video, for the third A-C interval (ignoring the E; if it were present, the C-E-A chord will be rather dissonant), instead of 3/5, I could use 7/12, to let the C stay in the position.
No, you couldn't use 7/12 to let the C stay in position. The ratio of A to the low G is 9/4. Instead of 3/5 for the C, which results in a ration with the low G of 27/20, you want to use 7/12, because you think that would put it "in position." But that puts C at 63/48. The position that eliminates pitch drift is 4/3. So instead of the syntonic comma of 81/80 demonstrated in the video, all you've done is establish a different comma of 63/64. (Wikipedia reports that this is the septimal comma or Archytas' comma.) Instead of going up 21.5 cents with each iteration, with your system the pitch will drop 27.3 cents. The only interval from the A to the C that avoids pitch drift is 27/16.
(In practice, this progression is quite simple to tune in just intonation simply by allowing a Pythagorean major third of 81/64 between the C and the E instead of requiring a 5-limit just major third of 5/4. Then the E can be a perfect fourth, and all the chords are quite tolerable. The C-E-A chord is a bit buzzy, but that's ok because its function is transient, so it does not require the sense of "repose" associated with the just major third.)
Now barbershop groups (and others performing late-19th century music) will indeed lower their minor sevenths to get a septimal dominant seventh chord, so, for example, a V-I cadence might be like this:
Tenor 1: F4(21/8) E4(5/2)
Tenor 2: D4(9/4) C4(2)
Bass 1: B3(15/8) G3(3/2)
Bass 2: G2(3/4) C3(1)
That dominant seventh chord will have a very satisfying ring, but it comes with some problems: it yields a very small descending half step for the first tenor of 84 cents, and of course you can't use the F of 21/8 for hardly anything else: it's 29 cents flat from equal and 27 cents flat from a perfect fifth below C.
To test the 13/7 interval, I tried this Phrygian cadence in both traditional just intonation and a septimal tuning:
X: 1
M: 4/4
L: 1/4
K: Emin
%% score (V1 V2)
V:V1
V:V2 merge
% 1
[V:V1]c-|cB2A|B4
[V:V2]E|D2C2|B,4
For the traditional tuning, I used these pitches:
B3=247.5; C4=264; D4=293+1/3; E4=330; A4=440; B4=495; C5=528
This yields the following ratios:
8/5 9/5 27/16 15/8 5/3 2/1
For the septimal tuning, I used these pitches:
B3=238+1/3; C4=256+2/3; D4=293+1/3; E4=330; A4=440; B4=476+2/3; C5=513+1/3
This yields the following ratios:
14/9 7/4 13/8 13/7 12/7 2/1
Now I spend a lot of time listening to and singing music in just intonation. The septimal progression sounded so out of tune to me that I could not pay any attention to how the 13/7 interval sounded. But then I modified the example to stress that interval, and it did indeed sound ok:
X: 1
M: 4/4
L: 1/4
K: Emin
%% score (V1 V2)
V:V1
V:V2 merge
% 1
[V:V1]c-|cB2A|B4|B4|B4
[V:V2]E|D2C2|B,2C2|B,2C2|B,4
But whether any singing group would actually use it seems quite doubtful. As Athanasius notes in his answer, tendency notes are generally tuned more closely to the following note, creating a wider interval, but this interval is far narrower. Perhaps there is some other context in which it might appear. I'll think on it a bit and perhaps edit this answer if I come up with anything.