To determine if you have reasons to practice your Hanon exercises faster than the recommended tempo markings, it is helpful to consider your individual goals, and which aspects of your skills that you're trying to improve during a given practice session. Depending on your skill level, you might find that you could even double the recommended tempo, although that could introduce some bad habits or cause injury if you're not sufficiently skilled, and it may not be worth the risk to push yourself too far.
Some potential reasons for edging the tempo higher on your Hanon practice regimen might include:
- To find your physical and mental limits (which will likely change daily) of clean and even technique to determine where improvement is needed
- Mental training, to improve how the mind can "follow" fast passages, tracking to a metronome, in coordination with what is happening physically
- Fine-tuning the strength of the muscles involved
- Providing a boost of motivation, in that pushing your limits can result in finding out you can handle more than you thought. That can build the momentum to keep you advancing (but again, be careful not to push so far as to hurt yourself, or your style and technique.)
If you choose to go faster, just be mindful about how and why you're doing it.
The other part of your question was whether you should instead push the tempo with scales and arpeggios, and I believe that the same principles apply. That being said, about 25 years ago, I was in the audience where Ellis Marsalis, Jr. was giving an amazing jazz concert, and he answered some questions afterwards. One person asked about whether he spent a lot of time practicing scales and arpeggios, and Ellis alluded that he got all the practice of those elements that he needed just by playing the music. I think that's a valuable guiding principle.